3PGG Dna Binding Protein date Nov 01, 2010
title Crystal Structure Of Cryptosporidium Parvum U6 Snrna-Associa Like Protein Lsm5
authors A.Dong, M.Gao, Y.Zhao, J.Lew, G.A.Wasney, I.Kozieradzki, M.Vedadi, A.Edwards, C.Arrowsmith, J.Weigelt, M.Sundstrom, A.Bochkarev, R. J.Artz, Structural Genomics Consortium (Sgc)
compound source
Molecule: U6 Snrna-Associated Sm-Like Protein Lsm5. Sm Doma
Chain: A, B
Engineered: Yes
 Organism_scientific: Cryptosporidium Parvum
Organism_taxid: 5807
Gene: Cgd7_4580
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21 Codon Plus Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P28-Lic-Thrombin Derived From Pe
symmetry Space Group: P 3 2 1
R_factor 0.214 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
101.163 101.163 49.092 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.14 Å
note 3PGG supersedes 2FWK
Gene CGD7
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceGenome-scale protein expression and structural biology of Plasmodium falciparum and related Apicomplexan organisms., Vedadi M, Lew J, Artz J, Amani M, Zhao Y, Dong A, Wasney GA, Gao M, Hills T, Brokx S, Qiu W, Sharma S, Diassiti A, Alam Z, Melone M, Mulichak A, Wernimont A, Bray J, Loppnau P, Plotnikova O, Newberry K, Sundararajan E, Houston S, Walker J, Tempel W, Bochkarev A, Kozieradzki I, Edwards A, Arrowsmith C, Roos D, Kain K, Hui R, Mol Biochem Parasitol. 2007 Jan;151(1):100-10. Epub 2006 Nov 13. PMID:17125854
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk]
  • Biological Unit Coordinates (3pgg.pdb1.gz) 71 Kb
  • CSU: Contacts of Structural Units for 3PGG
  • Structure Factors (208 Kb)
  • Retrieve 3PGG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PGG from S2C, [Save to disk]
  • Re-refined 3pgg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3PGG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3PGG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3PGG, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3pgg_A] [3pgg_B] [3pgg]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3PGG: [Sm ] by SMART
    • Other resources with information on 3PGG
  • Community annotation for 3PGG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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