3PIH Hydrolase Dna date Nov 06, 2010
title T. Maritima Uvra In Complex With Fluorescein-Modified Dna
authors M.Jaciuk, E.Nowak, M.Nowotny
compound source
Molecule: Uvrabc System Protein A
Chain: A
Synonym: Uvra Protein, Excinuclease Abc Subunit A
Engineered: Yes
 Organism_scientific: Thermotoga Maritima
Organism_taxid: 2336
Gene: Uvra, Tm_0480
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (32-Mer)
Chain: D
Engineered: Yes
Synthetic: Yes
Other_details: Synthetic Dna Oligo
symmetry Space Group: P 42
R_factor 0.198 R_Free 0.265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
107.510 107.510 108.256 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand PPV, ZN enzyme
Gene TM
Gene
Ontology
ChainFunctionProcessComponent
A
  • nuclease activity


    • Primary referenceStructure of UvrA nucleotide excision repair protein in complex with modified DNA., Jaciuk M, Nowak E, Skowronek K, Tanska A, Nowotny M, Nat Struct Mol Biol. 2011 Feb;18(2):191-7. Epub 2011 Jan 16. PMID:21240268
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (149 Kb) [Save to disk]
  • Biological Unit Coordinates (3pih.pdb1.gz) 282 Kb
  • LPC: Ligand-Protein Contacts for 3PIH
  • CSU: Contacts of Structural Units for 3PIH
  • Structure Factors (640 Kb)
  • Retrieve 3PIH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PIH from S2C, [Save to disk]
  • Re-refined 3pih structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3PIH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3PIH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3PIH, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3pih_D] [3pih] [3pih_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3PIH: [AAA ] by SMART
    • Other resources with information on 3PIH
  • Community annotation for 3PIH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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