3PMY	Hydrolase Hydrolase Inhibitor	date	Nov 18, 2010
title	Endothiapepsin In Complex With A Fragment
authors	H.Koester, A.Heine, G.Klebe
compound		source
Molecule: Endothiapepsin Chain: A Synonym: Aspartate Protease Ec: 3.4.23.22		Organism_scientific: Cryphonectria Parasitica Organism_common: Chesnut Blight Fungus Organism_taxid: 5116
symmetry	Space Group: P 1 21 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 45.370 73.130 52.790 90.00 109.57 90.00
method	X-Ray Diffraction	resolution	1.38 Å
ligand	41L, GOL	enzyme	Hydrolase E.C.3.4.23.22 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	A Small Nonrule of 3 Compatible Fragment Library Provides High Hit Rate of Endothiapepsin Crystal Structures with Various Fragment Chemotypes., Koster H, Craan T, Brass S, Herhaus C, Zentgraf M, Neumann L, Heine A, Klebe G, J Med Chem. 2011 Oct 25. PMID:21972967

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (110 Kb) [Save to disk] Biological Unit Coordinates (3pmy.pdb1.gz) 106 Kb LPC: Ligand-Protein Contacts for 3PMY CSU: Contacts of Structural Units for 3PMY Structure Factors (455 Kb) Retrieve 3PMY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3PMY from S2C, [Save to disk] Re-refined 3pmy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3PMY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3PMY

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3PMY, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3pmy] [3pmy_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3PMY

Community annotation for 3PMY at PDBWiki (http://pdbwiki.org)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---