3PO6 Lyase Lyase Inhibitor date Nov 22, 2010
title Crystal Structure Of Human Carbonic Anhydrase II With 6,7-Di Methyl-3,4-Dihydroisoquinoline-2(1h)-Sulfonamide
authors P.Mader, J.Brynda, R.Gitto, S.Agnello, S.Ferro, L.De Luca, D.Vullo C.T.Supuran, A.Chimirri
compound source
Molecule: Carbonic Anhydrase 2
Chain: A
Synonym: Carbonate Dehydratase II, Carbonic Anhydrase C, Ca Carbonic Anhydrase II, Ca-II;
Ec: 4.2.1.1
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.143 R_Free 0.175
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.180 41.210 72.000 90.00 104.31 90.00
method X-Ray Diffractionresolution 1.47 Å
ligand ACT, DT9, GOL, RDT, ZN enzyme Lyase E.C.4.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for the interaction between carbonic anhydrase and 1,2,3,4-tetrahydroisoquinolin-2-ylsulfonamides., Mader P, Brynda J, Gitto R, Agnello S, Pachl P, Supuran CT, Chimirri A, Rezacova P, J Med Chem. 2011 Apr 14;54(7):2522-6. Epub 2011 Mar 11. PMID:21395315
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (104 Kb) [Save to disk]
  • Biological Unit Coordinates (3po6.pdb1.gz) 98 Kb
  • LPC: Ligand-Protein Contacts for 3PO6
  • CSU: Contacts of Structural Units for 3PO6
  • Structure Factors (574 Kb)
  • Retrieve 3PO6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PO6 from S2C, [Save to disk]
  • Re-refined 3po6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3PO6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3PO6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3PO6, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3po6] [3po6_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3PO6: [Carb_anhydrase ] by SMART
  • Other resources with information on 3PO6
  • Community annotation for 3PO6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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