3PTE Hydrolase, Transpeptidase date Aug 05, 1994
title The Refined Crystallographic Structure Of A Dd-Peptidase Pen Target Enzyme At 1.6 A Resolution
authors J.A.Kelly, A.P.Kuzin
compound source
Molecule: D-Alanyl-D-Alanine Carboxypeptidase Transpeptidas
Chain: A
Ec: 3.4.16.4
Engineered: Yes
 Organism_scientific: Streptomyces Sp.
Organism_taxid: 31952
Strain: R61
symmetry Space Group: P 21 21 21
R_factor 0.148 R_Free 0.211
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.060 67.310 102.440 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand
enzyme Hydrolase E.C.3.4.16.4 BRENDA
note 3PTE (Molecule of the Month:pdb29)supersedes 1PTE
related structures by homologous chain: 1CEG, 1PW8
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe refined crystallographic structure of a DD-peptidase penicillin-target enzyme at 1.6 A resolution., Kelly JA, Kuzin AP, J Mol Biol. 1995 Nov 24;254(2):223-36. PMID:7490745
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk]
  • Biological Unit Coordinates (3pte.pdb1.gz) 60 Kb
  • CSU: Contacts of Structural Units for 3PTE
  • Likely Quarternary Molecular Structure file(s) for 3PTE
  • Retrieve 3PTE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PTE from S2C, [Save to disk]
    • View 3PTE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3PTE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3PTE, from MSDmotif at EBI
  • Genome occurence of 3PTE's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d3pte__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3pte_A] [3pte]
  • SWISS-PROT database: [P15555]
  • Domain organization of [DAC_STRSR] by SWISSPFAM
    • Other resources with information on 3PTE
  • Community annotation for 3PTE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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