OCA Atlas for 3PVO

3PVO

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

enzyme

Gene
Ontology

Chain	Function	Process	Component
J, I, R, Q, C, P, H, T, K, O, L, A, F, N, D, G, S, M, E, B

Primary reference

A Staggered Decameric Assembly of Human C-Reactive Protein Stabilized by Zinc Ions Revealed by X-ray Crystallography., Guillon C, Bigouagou UM, Folio C, Jeannin P, Delneste Y, Gouet P, Protein Pept Lett. 2014;22(3):248-55. PMID:25552313

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (657 Kb) [Save to disk]

Biological Unit Coordinates (3pvo.pdb1.gz) 169 Kb

Biological Unit Coordinates (3pvo.pdb2.gz) 169 Kb

Biological Unit Coordinates (3pvo.pdb3.gz) 169 Kb

Biological Unit Coordinates (3pvo.pdb4.gz) 170 Kb

LPC: Ligand-Protein Contacts for 3PVO

CSU: Contacts of Structural Units for 3PVO

Structure Factors (760 Kb)

Retrieve 3PVO in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3PVO from S2C, [Save to disk]

Re-refined 3pvo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3PVO in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3pvo] [3pvo_A] [3pvo_B] [3pvo_C] [3pvo_D] [3pvo_E] [3pvo_F] [3pvo_G] [3pvo_H] [3pvo_I] [3pvo_J] [3pvo_K] [3pvo_L] [3pvo_M] [3pvo_N] [3pvo_O] [3pvo_P] [3pvo_Q] [3pvo_R] [3pvo_S] [3pvo_T]

SWISS-PROT database:

Domain found in 3PVO: [PTX ] by SMART

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