3PWY Transferase Transferase Inhibitor date Dec 09, 2010
title Crystal Structure Of An Extender (Spd28345)-Modified Human P Complex 2
authors R.A.Elling, D.M.Penny, R.L.Simmons, D.A.Erlanson, M.J.Romanowski
compound source
Molecule: 3-Phosphoinositide-Dependent Protein Kinase 1
Chain: A
Fragment: Kinase Domain (Unp Residues 51-359)
Synonym: Hpdk1
Ec: 2.7.11.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pdk1, Pdpk1
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
symmetry Space Group: P 32 2 1
R_factor 0.220 R_Free 0.276
crystal
cell
length a length b length c angle alpha angle beta angle gamma
122.376 122.376 47.632 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.50 Å
ligand SYP enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery of a potent and highly selective PDK1 inhibitor via fragment-based drug discovery., Erlanson DA, Arndt JW, Cancilla MT, Cao K, Elling RA, English N, Friedman J, Hansen SK, Hession C, Joseph I, Kumaravel G, Lee WC, Lind KE, McDowell RS, Miatkowski K, Nguyen C, Nguyen TB, Park S, Pathan N, Penny DM, Romanowski MJ, Scott D, Silvian L, Simmons RL, Tangonan BT, Yang W, Sun L, Bioorg Med Chem Lett. 2011 Mar 17. PMID:21459573
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (3pwy.pdb1.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 3PWY
  • CSU: Contacts of Structural Units for 3PWY
  • Structure Factors (43 Kb)
  • Retrieve 3PWY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PWY from S2C, [Save to disk]
  • Re-refined 3pwy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3PWY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3PWY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3PWY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3pwy_A] [3pwy]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3PWY: [S_TKc ] by SMART
  • Other resources with information on 3PWY
  • Community annotation for 3PWY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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