3Q5H Hydrolase Hydrolase Inhibitor date Dec 28, 2010
title Clinically Useful Alkyl Amine Renin Inhibitors
authors Z.Wu, B.M.Mckeever
compound source
Molecule: Renin
Chain: A, B
Fragment: Unp Residues 67-406
Synonym: Angiotensinogenase
Ec: 3.4.23.15
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ren, Renin
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek 293
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcdna3.1
symmetry Space Group: P 21 21 21
R_factor 0.224 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.650 97.850 149.006 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.16 Å
ligand CL, NAG, RX6 BindingDB enzyme Hydrolase E.C.3.4.23.15 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDiscovery of VTP-27999, an Alkyl Amine Renin Inhibitor with Potential for Clinical Utility., Jia L, Simpson RD, Yuan J, Xu Z, Zhao W, Cacatian S, Tice CM, Guo J, Ishchenko A, Singh SB, Wu Z, McKeever BM, Bukhtiyarov Y, Johnson JA, Doe CP, Harrison RK, McGeehan GM, Dillard LW, Baldwin JJ, Claremon DA, ACS Med Chem Lett. 2011 Aug 9;2(10):747-51. doi: 10.1021/ml200137x. eCollection, 2011 Oct 13. PMID:24900262
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (115 Kb) [Save to disk]
  • Biological Unit Coordinates (3q5h.pdb1.gz) 57 Kb
  • Biological Unit Coordinates (3q5h.pdb2.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 3Q5H
  • CSU: Contacts of Structural Units for 3Q5H
  • Structure Factors (639 Kb)
  • Retrieve 3Q5H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3Q5H from S2C, [Save to disk]
  • Re-refined 3q5h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3Q5H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3Q5H
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3Q5H, from MSDmotif at EBI
  • Fold representative 3q5h from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3q5h_A] [3q5h] [3q5h_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3Q5H
  • Community annotation for 3Q5H at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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