OCA Atlas for 3Q6F

3Q6F

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

PEG, TYS

enzyme

Primary reference

Structural Analysis of Human and Macaque mAbs 2909 and 2.5B: Implications for the Configuration of the Quaternary Neutralizing Epitope of HIV-1 gp120., Spurrier B, Sampson JM, Totrov M, Li H, O'Neal T, Williams C, Robinson J, Gorny MK, Zolla-Pazner S, Kong XP, Structure. 2011 May 11;19(5):691-9. PMID:21565703

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (412 Kb) [Save to disk]

Biological Unit Coordinates (3q6f.pdb1.gz) 74 Kb

Biological Unit Coordinates (3q6f.pdb2.gz) 74 Kb

Biological Unit Coordinates (3q6f.pdb3.gz) 74 Kb

Biological Unit Coordinates (3q6f.pdb4.gz) 74 Kb

Biological Unit Coordinates (3q6f.pdb5.gz) 74 Kb

Biological Unit Coordinates (3q6f.pdb6.gz) 74 Kb

LPC: Ligand-Protein Contacts for 3Q6F

CSU: Contacts of Structural Units for 3Q6F

Structure Factors (547 Kb)

Retrieve 3Q6F in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3Q6F from S2C, [Save to disk]

Re-refined 3q6f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3Q6F in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3q6f] [3q6f_A] [3q6f_B] [3q6f_C] [3q6f_D] [3q6f_E] [3q6f_F] [3q6f_G] [3q6f_H] [3q6f_I] [3q6f_J] [3q6f_K] [3q6f_L]

SWISS-PROT database:

Domains found in 3Q6F: [IG_like] [IGv ] by SMART

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