3Q7Q Signaling Protein date Jan 05, 2011
title Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
authors Y.Sasson, L.Navon-Perry, J.A.Hirsch
compound source
Molecule: Gtp-Binding Protein Rad
Chain: A, B
Fragment: G-Domain, Residues 90-255
Synonym: Rad1, Ras Associated With Diabetes
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rrad, Rad
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21d
symmetry Space Group: P 31
R_factor 0.166 R_Free 0.201
length a length b length c angle alpha angle beta angle gamma
38.370 38.370 154.111 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand CA, GNP, MG enzyme
A, B

Primary referenceRGK Family G-Domain:GTP Analog Complex Structures and Nucleotide-Binding Properties., Sasson Y, Navon-Perry L, Huppert D, Hirsch JA, J Mol Biol. 2011 Aug 29. PMID:21903096
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (3q7q.pdb1.gz) 25 Kb
  • Biological Unit Coordinates (3q7q.pdb2.gz) 24 Kb
  • LPC: Ligand-Protein Contacts for 3Q7Q
  • CSU: Contacts of Structural Units for 3Q7Q
  • Structure Factors (61 Kb)
  • Retrieve 3Q7Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3Q7Q from S2C, [Save to disk]
  • Re-refined 3q7q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3Q7Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3Q7Q
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3Q7Q, from MSDmotif at EBI
  • Fold representative 3q7q from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3q7q_B] [3q7q] [3q7q_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3Q7Q: [small_GTPase ] by SMART
  • Other resources with information on 3Q7Q
  • Community annotation for 3Q7Q at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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