OCA Atlas for 3Q9F

3Q9F

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

CXS, K, NA, PO4, ZN

enzyme

Gene
Ontology

Chain	Function	Process	Component
J, L, C, K, A, F, E, I, G, B, D, H

Primary reference

Structure of Prokaryotic Polyamine Deacetylase Reveals Evolutionary Functional Relationships with Eukaryotic Histone Deacetylases ., Lombardi PM, Angell HD, Whittington DA, Flynn EF, Rajashankar KR, Christianson DW, Biochemistry. 2011 Jan 26. PMID:21268586

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (649 Kb) [Save to disk]

Biological Unit Coordinates (3q9f.pdb1.gz) 115 Kb

Biological Unit Coordinates (3q9f.pdb2.gz) 115 Kb

Biological Unit Coordinates (3q9f.pdb3.gz) 115 Kb

Biological Unit Coordinates (3q9f.pdb4.gz) 115 Kb

Biological Unit Coordinates (3q9f.pdb5.gz) 116 Kb

Biological Unit Coordinates (3q9f.pdb6.gz) 115 Kb

LPC: Ligand-Protein Contacts for 3Q9F

CSU: Contacts of Structural Units for 3Q9F

Structure Factors (2884 Kb)

Retrieve 3Q9F in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3Q9F from S2C, [Save to disk]

Re-refined 3q9f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3Q9F in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3q9f] [3q9f_A] [3q9f_B] [3q9f_C] [3q9f_D] [3q9f_E] [3q9f_F] [3q9f_G] [3q9f_H] [3q9f_I] [3q9f_J] [3q9f_K] [3q9f_L]

SWISS-PROT database:

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