3QD0	Transferase Transferase Inhibitor	date	Jan 17, 2011
title	Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain Wit 1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-Pyrimidinyl]-6-Met Phenyl-3-Piperidinecarboxamide
authors	J.R.Medina, C.J.Becker, C.W.Blackledge, C.Duquenne, Y.Feng, S.W.G D.Heerding, W.H.Li, W.H.Miller, S.P.Romeril, D.Scherzer, A.Shu, M A.R.Chadderton, M.Dumble, C.M.Gradiner, S.Gilbert, Q.Liu, S.K.Ra V.Sudakin, H.Xiang, P.G.Brady, N.Campobasso, P.Ward, J.M.Axten
compound		source
Molecule: 3-Phosphoinositide-Dependent Protein Kinase 1 Chain: A Fragment: Kinase Domain, Residues 48-359 Synonym: Hpdk1 Ec: 2.7.11.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pdk1, Pdpk1 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108
symmetry	Space Group: P 32 2 1	R_factor 0.189 R_Free 0.231
crystal cell	length a length b length c angle alpha angle beta angle gamma 123.943 123.943 46.987 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.99 Å
ligand	3Q4, GOL, SO4 BindingDB	enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structure-Based Design of Potent and Selective 3-Phosphoinositide-Dependent Kinase-1 (PDK1) Inhibitors., Medina JR, Becker CJ, Blackledge CW, Duquenne C, Feng Y, Grant SW, Heerding D, Li WH, Miller WH, Romeril SP, Scherzer D, Shu A, Bobko MA, Chadderton AR, Dumble M, Gardiner CM, Gilbert S, Liu Q, Rabindran SK, Sudakin V, Xiang H, Brady PG, Campobasso N, Ward P, Axten JM, J Med Chem. 2011 Feb 22. PMID:21341675

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk] Biological Unit Coordinates (3qd0.pdb1.gz) 50 Kb LPC: Ligand-Protein Contacts for 3QD0 CSU: Contacts of Structural Units for 3QD0 Structure Factors (209 Kb) Retrieve 3QD0 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3QD0 from S2C, [Save to disk] Re-refined 3qd0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3QD0 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3QD0

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3QD0, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3qd0_A] [3qd0] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3QD0: [S_TKc ] by SMART

Other resources with information on 3QD0

Community annotation for 3QD0 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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