OCA Atlas for 3QD8

3QD8

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
F, K, A, R, H, V, N, C, B, M, W, T, X, G, I, Q, U, J, S, L, O, D, P, E

Primary reference

Ferritin Structure from Mycobacterium tuberculosis: Comparative Study with Homologues Identifies Extended C-Terminus Involved in Ferroxidase Activity., Khare G, Gupta V, Nangpal P, Gupta RK, Sauter NK, Tyagi AK, PLoS One. 2011 Apr 8;6(4):e18570. PMID:21494619

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (628 Kb) [Save to disk]

Biological Unit Coordinates (3qd8.pdb1.gz) 621 Kb

CSU: Contacts of Structural Units for 3QD8

Structure Factors (825 Kb)

Retrieve 3QD8 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3QD8 from S2C, [Save to disk]

Re-refined 3qd8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3QD8 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3qd8] [3qd8_A] [3qd8_B] [3qd8_C] [3qd8_D] [3qd8_E] [3qd8_F] [3qd8_G] [3qd8_H] [3qd8_I] [3qd8_J] [3qd8_K] [3qd8_L] [3qd8_M] [3qd8_N] [3qd8_O] [3qd8_P] [3qd8_Q] [3qd8_R] [3qd8_S] [3qd8_T] [3qd8_U] [3qd8_V] [3qd8_W] [3qd8_X]

SWISS-PROT database:

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