3QDW Sugar Binding Protein date Jan 19, 2011
title Structure Of The Hexagonal Form Of The Boletus Edulis Lectin Complex With N-Acetyl Glucosamine And N-Acetyl Galactosamin
authors M.Bovi, M.E.Carrizo, S.Capaldi, M.Perduca, L.R.Chiarelli, M.Galli H.L.Monaco
compound source
Molecule: Boletus Edulis Lectin
Chain: A, B
 Organism_scientific: Boletus Edulis
Organism_taxid: 36056
symmetry Space Group: P 61 2 2
R_factor 0.178 R_Free 0.196
crystal
cell
length a length b length c angle alpha angle beta angle gamma
123.818 123.818 104.322 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
ligand A2G, ACE, NDG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceSTRUCTURE OF A LECTIN WITH ANTITUMORAL PROPERTIES IN KING BOLETE (Boletus edulis) MUSHROOMS., Bovi M, Carrizo ME, Capaldi S, Perduca M, Chiarelli LR, Galliano M, Monaco HL, Glycobiology. 2011 Feb 8. PMID:21303815
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (104 Kb) [Save to disk]
  • Biological Unit Coordinates (3qdw.pdb1.gz) 195 Kb
  • Biological Unit Coordinates (3qdw.pdb2.gz) 98 Kb
  • Biological Unit Coordinates (3qdw.pdb3.gz) 99 Kb
  • LPC: Ligand-Protein Contacts for 3QDW
  • CSU: Contacts of Structural Units for 3QDW
  • Structure Factors (823 Kb)
  • Retrieve 3QDW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3QDW from S2C, [Save to disk]
  • Re-refined 3qdw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3QDW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3QDW
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3QDW, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3qdw_A] [3qdw] [3qdw_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3QDW
  • Community annotation for 3QDW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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