3QDZ	Hydrolase Hydrolase Receptor	date	Jan 19, 2011
title	Crystal Structure Of The Human Thrombin Mutant D102n In Comp The Extracellular Fragment Of Human Par4.
authors	P.Gandhi, Z.Chen, E.Appelbaum, F.Zapata, E.Di Cera
compound		source
Molecule: Thrombin Light Chain Chain: A, C Synonym: Coagulation Factor II, Activation Peptide Fragment Activation Peptide Fragment 2, Thrombin Light Chain, Thromb Chain; Ec: 3.4.21.5 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: F2 Expression_system: Mesocricetus Auratus Expression_system_taxid: 10036 Expression_system_cell_line: Bhk
Molecule: Thrombin Heavy Chain Chain: B, D Synonym: Coagulation Factor II, Activation Peptide Fragment Activation Peptide Fragment 2, Thrombin Light Chain, Thromb Chain; Ec: 3.4.21.5 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: F2 Expression_system: Mesocricetus Auratus Expression_system_taxid: 10036 Expression_system_cell_line: Bhk
Molecule: Proteinase-Activated Receptor 4 Chain: E, F Synonym: Par-4, Coagulation Factor II Receptor-Like 3, Thro Receptor-Like 3; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: F2rl3, Par4 Expression_system: Mesocricetus Auratus Expression_system_taxid: 10036 Expression_system_cell_line: Bhk
symmetry	Space Group: C 2 2 21	R_factor 0.304 R_Free 0.364
crystal cell	length a length b length c angle alpha angle beta angle gamma 91.414 102.876 146.390 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand		enzyme	Hydrolase E.C.3.4.21.5 BRENDA
Gene Ontology	Chain Function Process Component A, C D, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk] Biological Unit Coordinates (3qdz.pdb1.gz) 48 Kb Biological Unit Coordinates (3qdz.pdb2.gz) 48 Kb CSU: Contacts of Structural Units for 3QDZ Structure Factors (207 Kb) Retrieve 3QDZ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3QDZ from S2C, [Save to disk] Re-refined 3qdz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3QDZ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3QDZ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3QDZ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3qdz_E] [3qdz] [3qdz_A] [3qdz_B] [3qdz_F] [3qdz_C] [3qdz_D] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3QDZ: [Tryp_SPc ] by SMART

Other resources with information on 3QDZ

Community annotation for 3QDZ at PDBWiki (http://pdbwiki.org)

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