3QFQ Dna Binding Protein Dna date Jan 22, 2011
title Asymmetric Assembly Of Merkel Cell Polyomavirus Large T-Anti Binding Domains At The Viral Origin
authors C.J.Harrison, G.Meinke, A.Bohm
compound source
Molecule: Large T Antigen
Chain: A, B, E
Fragment: Origin Binding Domain (Unp Residues 308-433)
Engineered: Yes
 Organism_scientific: Merkel Cell Polyomavirus
Organism_taxid: 493803
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-15b

Molecule: Dna (26-Mer)
Chain: W
Engineered: Yes
Other_details: Merkel Cell Virus Origin Site 12 (Watson St
Synthetic: Yes
Other_details: Synthesized

Molecule: Dna (26-Mer)
Chain: C
Engineered: Yes
Other_details: Merkel Cell Virus Origin Site 12 (Crick Str
Synthetic: Yes
Other_details: Synthesized
symmetry Space Group: P 21 21 2
R_factor 0.225 R_Free 0.286
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.400 171.340 51.280 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
Gene
Ontology
ChainFunctionProcessComponent
A, E, B


Primary referenceAsymmetric Assembly of Merkel Cell Polyomavirus Large T-Antigen Origin Binding Domains at the Viral Origin., Harrison CJ, Meinke G, Kwun HJ, Rogalin H, Phelan PJ, Bullock PA, Chang Y, Moore PS, Bohm A, J Mol Biol. 2011 Apr 9. PMID:21501625
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (166 Kb) [Save to disk]
  • Biological Unit Coordinates (3qfq.pdb1.gz) 159 Kb
  • CSU: Contacts of Structural Units for 3QFQ
  • Structure Factors (279 Kb)
  • Retrieve 3QFQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3QFQ from S2C, [Save to disk]
  • Re-refined 3qfq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3QFQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3QFQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3QFQ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3qfq_E] [3qfq_A] [3qfq_W] [3qfq] [3qfq_B] [3qfq_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3QFQ
  • Community annotation for 3QFQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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