3QJU Oxidoreductase date Jan 30, 2011
title The Structure Of And Photolytic Induced Changes Of Carbon Mo Binding To The Cytochrome Ba3-Oxidase From Thermus Thermoph
authors B.Liu, Y.Zhang, J.T.Sage, T.Doukov, Y.Chen, C.D.Stout, J.A.Fee
compound source
Molecule: Cytochrome C Oxidase Subunit 1
Chain: A
Synonym: Cytochrome C Ba(3) Subunit I, Cytochrome C Oxidase Polypeptide I, Cytochrome Cba3 Subunit 1;
Ec: 1.9.3.1
Engineered: Yes
Organism_scientific: Thermus Thermophilus
Organism_taxid: 300852
Strain: Hb8
Gene: Cbaa, Ttha1135
Expression_system: Thermus Thermophilus
Expression_system_taxid: 300852
Expression_system_strain: Hb8
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmk18

Molecule: Cytochrome C Oxidase Subunit 2
Chain: B
Synonym: Cytochrome C Ba(3) Subunit II, Cytochrome C Oxidas Polypeptide II, Cytochrome Cba3 Subunit 2;
Ec: 1.9.3.1
Engineered: Yes

Organism_scientific: Thermus Thermophilus
Organism_taxid: 300852
Strain: Hb8
Gene: Cbab, Ctac, Ttha1134
Expression_system: Thermus Thermophilus
Expression_system_taxid: 300852
Expression_system_strain: Hb8
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmk18

Molecule: Cytochrome C Oxidase Polypeptide 2a
Chain: C
Synonym: Cytochrome C Ba(3) Subunit Iia, Cytochrome C Oxida Polypeptide Iia, Cytochrome Cba3 Subunit 2a;
Ec: 1.9.3.1
Engineered: Yes

Organism_scientific: Thermus Thermophilus
Organism_taxid: 300852
Strain: Hb8
Gene: Cbad, Ttha1133
Expression_system: Thermus Thermophilus
Expression_system_taxid: 300852
Expression_system_strain: Hb8
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmk18
symmetry Space Group: P 43 21 2
R_factor 0.286 R_Free 0.329
crystal
cell
length a length b length c angle alpha angle beta angle gamma
109.750 109.750 164.770 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand CMO, CU1, CUA, HAS, HEM enzyme Oxidoreductase E.C.1.9.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • cytochrome-c oxidase activit...


  • B
  • cytochrome-c oxidase activit...


  • C


    Primary referenceStructural changes that occur upon photolysis of the Fe(II)(a3)-CO complex in the cytochrome ba(3)-oxidase of Thermus thermophilus: A combined X-ray crystallographic and infrared spectral study demonstrates CO binding to Cu(B)., Liu B, Zhang Y, Sage JT, Soltis SM, Doukov T, Chen Y, Stout CD, Fee JA, Biochim Biophys Acta. 2011 Dec 27. PMID:22226917
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (254 Kb) [Save to disk]
  • Biological Unit Coordinates (3qju.pdb1.gz) 247 Kb
  • LPC: Ligand-Protein Contacts for 3QJU
  • CSU: Contacts of Structural Units for 3QJU
  • Structure Factors (336 Kb)
  • Retrieve 3QJU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3QJU from S2C, [Save to disk]
  • Re-refined 3qju structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3QJU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3QJU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3QJU, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3qju_C] [3qju] [3qju_B] [3qju_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3QJU
  • Community annotation for 3QJU at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science