3QM1 Hydrolase date Feb 03, 2011
title Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl E Lj0536 S106a Mutant In Complex With Ethylferulate, Form II
authors P.J.Stogios, K.K.Lai, C.Vu, X.Xu, H.Cui, S.Molloy, C.F.Gonzalez, A. A.Savchenko
compound source
Molecule: Cinnamoyl Esterase
Chain: A
Fragment: Unp Residues 22-265
Ec: 3.1.1.-
Engineered: Yes
Mutation: Yes
Organism_scientific: Lactobacillus Johnsonii
Organism_taxid: 33959
Gene: Lj0536
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P15tv-L
symmetry Space Group: C 2 2 21
R_factor 0.147 R_Free 0.190
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.872 85.396 81.142 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.82 Å
ligand CL, NA, ZYC enzyme Hydrolase E.C.3.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAn inserted alpha/beta subdomain shapes the catalytic pocket of Lactobacillus johnsonii cinnamoyl esterase., Lai KK, Stogios PJ, Vu C, Xu X, Cui H, Molloy S, Savchenko A, Yakunin A, Gonzalez CF, PLoS One. 2011;6(8):e23269. Epub 2011 Aug 18. PMID:21876742
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (3qm1.pdb1.gz) 168 Kb
  • Biological Unit Coordinates (3qm1.pdb2.gz) 86 Kb
  • LPC: Ligand-Protein Contacts for 3QM1
  • CSU: Contacts of Structural Units for 3QM1
  • Structure Factors (250 Kb)
  • Retrieve 3QM1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3QM1 from S2C, [Save to disk]
  • Re-refined 3qm1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3QM1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3QM1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3QM1, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3qm1_A] [3qm1]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3QM1
  • Community annotation for 3QM1 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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