3QSY Translation Rna date Feb 22, 2011
title Recognition Of The Methionylated Initiator Trna By The Trans Initiation Factor 2 In Archaea
authors O.S.Nikonov, E.A.Stolboushkina, N.V.Zelinskaya, A.D.Nikulin, M.B S.V.Nikonov
compound source
Molecule: Translation Initiation Factor 2 Subunit Gamma
Chain: A
Synonym: Aif2-Gamma, Eif-2-Gamma
Engineered: Yes
Organism_scientific: Sulfolobus Solfataricus
Organism_taxid: 2287
Gene: Eif2g
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Translation Initiation Factor 2 Subunit Alpha
Chain: B
Fragment: Domain 3
Synonym: Aif2-Alpha, Eif-2-Alpha
Engineered: Yes

Organism_scientific: Sulfolobus Solfataricus
Organism_taxid: 2287
Gene: Eif2a
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Trna
Chain: D
Other_details: Met-Trnai From Escherichia Coli(Unmodified B

Organism_scientific: Escherichia Coli
Organism_taxid: 562
symmetry Space Group: P 31 2 1
R_factor 0.278 R_Free 0.302
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.680 93.680 220.030 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.20 Å
ligand GNP, MET enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • translation elongation facto...


  • B


    Primary referenceCrystal Structure of the Archaeal Translation Initiation Factor 2 in Complex with a GTP Analogue and Met-tRNA(f)(Met)., Stolboushkina E, Nikonov S, Zelinskaya N, Arkhipova V, Nikulin A, Garber M, Nikonov O, J Mol Biol. 2013 Jan 3. pii: S0022-2836(12)00971-0. doi:, 10.1016/j.jmb.2012.12.023. PMID:23291527
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (244 Kb) [Save to disk]
  • Biological Unit Coordinates (3qsy.pdb1.gz) 237 Kb
  • LPC: Ligand-Protein Contacts for 3QSY
  • CSU: Contacts of Structural Units for 3QSY
  • Structure Factors (268 Kb)
  • Retrieve 3QSY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3QSY from S2C, [Save to disk]
  • View 3QSY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3QSY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3QSY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3qsy_B] [3qsy] [3qsy_D] [3qsy_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3QSY
  • Community annotation for 3QSY at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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