OCA Atlas for 3QYD

3QYD

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
C, B, A	endopeptidase inhibitor acti... serine-type endopeptidase in...

Primary reference

Role of remote scaffolding residues in the inhibitory loop pre-organization, flexibility, rigidification and enzyme inhibition of serine protease inhibitors., Majumder S, Khamrui S, Dasgupta J, Dattagupta JK, Sen U, Biochim Biophys Acta. 2012 Jul;1824(7):882-90. doi: 10.1016/j.bbapap.2012.04.009., Epub 2012 May 1. PMID:22709512

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk]

Biological Unit Coordinates (3qyd.pdb1.gz) 30 Kb

Biological Unit Coordinates (3qyd.pdb2.gz) 30 Kb

Biological Unit Coordinates (3qyd.pdb3.gz) 30 Kb

CSU: Contacts of Structural Units for 3QYD

Structure Factors (98 Kb)

Retrieve 3QYD in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3QYD from S2C, [Save to disk]

Re-refined 3qyd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3QYD in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3qyd] [3qyd_A] [3qyd_B] [3qyd_C]

SWISS-PROT database:

Domain found in 3QYD: [STI ] by SMART

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]