3R1C Rna date Mar 10, 2011
title Crystal Structure Of Gcggcggc Duplex
authors A.Kiliszek, R.Kierzek, W.J.Krzyzosiak, W.Rypniewski
compound source
Molecule: Rna (5'-R(Gpcpgpgpcpgpgpc)-3')
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R U, W, X, V, Z, A, B, C, D, E, F, G, H, I, J;
Engineered: Yes
 Synthetic: Yes
Other_details: This Sequence Is Found In Human Mrna
symmetry Space Group: P 1
R_factor 0.216 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.697 76.891 85.398 89.98 88.61 77.29
method X-Ray Diffractionresolution 2.05 Å
ligand SO4 enzyme
Primary referenceCrystal structures of CGG RNA repeats with implications for fragile X-associated tremor ataxia syndrome., Kiliszek A, Kierzek R, Krzyzosiak WJ, Rypniewski W, Nucleic Acids Res. 2011 May 19. PMID:21596781
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (137 Kb) [Save to disk]
  • Biological Unit Coordinates (3r1c.pdb1.gz) 8 Kb
  • Biological Unit Coordinates (3r1c.pdb2.gz) 8 Kb
  • Biological Unit Coordinates (3r1c.pdb3.gz) 8 Kb
  • Biological Unit Coordinates (3r1c.pdb4.gz) 9 Kb
  • Biological Unit Coordinates (3r1c.pdb5.gz) 8 Kb
  • Biological Unit Coordinates (3r1c.pdb6.gz) 8 Kb
  • Biological Unit Coordinates (3r1c.pdb7.gz) 8 Kb
  • Biological Unit Coordinates (3r1c.pdb8.gz) 8 Kb
  • Biological Unit Coordinates (3r1c.pdb9.gz) 8 Kb
  • LPC: Ligand-Protein Contacts for 3R1C
  • CSU: Contacts of Structural Units for 3R1C
  • Structure Factors (882 Kb)
  • Retrieve 3R1C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3R1C from S2C, [Save to disk]
  • Re-refined 3r1c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3R1C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3R1C
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3R1C, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3r1c_Q] [3r1c_d] [3r1c_X] [3r1c_i] [3r1c_D] [3r1c_V] [3r1c_c] [3r1c_K] [3r1c_j] [3r1c] [3r1c_P] [3r1c_O] [3r1c_b] [3r1c_C] [3r1c_h] [3r1c_M] [3r1c_G] [3r1c_B] [3r1c_Z] [3r1c_L] [3r1c_f] [3r1c_T] [3r1c_J] [3r1c_U] [3r1c_W] [3r1c_R] [3r1c_S] [3r1c_Y] [3r1c_e] [3r1c_H] [3r1c_I] [3r1c_N] [3r1c_F] [3r1c_a] [3r1c_g] [3r1c_A] [3r1c_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3R1C
  • Community annotation for 3R1C at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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