3R3M Apoptosis date Mar 16, 2011
title Crystal Structure Of The Faf1 Ubx Domain
authors P.Haenzelmann, H.Schindelin
compound source
Molecule: Fas-Associated Factor 1
Chain: B, A, C, D
Fragment: Unp Residues 568-650
Synonym: Hfaf1, Ubx Domain-Containing Protein 12, Ubx Domai Containing Protein 3a;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Faf1, Ubxd12, Ubxn3a, Cgi-03
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petm11
symmetry Space Group: P 61
R_factor 0.174 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.755 92.755 108.500 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.00 Å
ligand PO4 enzyme
Primary referenceHierarchical Binding of Cofactors to the AAA ATPase p97., Hanzelmann P, Buchberger A, Schindelin H, Structure. 2011 Jun 8;19(6):833-43. PMID:21645854
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (119 Kb) [Save to disk]
  • Biological Unit Coordinates (3r3m.pdb1.gz) 30 Kb
  • Biological Unit Coordinates (3r3m.pdb2.gz) 30 Kb
  • Biological Unit Coordinates (3r3m.pdb3.gz) 29 Kb
  • Biological Unit Coordinates (3r3m.pdb4.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 3R3M
  • CSU: Contacts of Structural Units for 3R3M
  • Structure Factors (574 Kb)
  • Retrieve 3R3M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3R3M from S2C, [Save to disk]
  • Re-refined 3r3m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3R3M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3R3M
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3R3M, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3r3m_B] [3r3m_D] [3r3m] [3r3m_C] [3r3m_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3R3M: [UBX ] by SMART
    • Other resources with information on 3R3M
  • Community annotation for 3R3M at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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