3R5N	Transcription Transcription Agonist	date	Mar 18, 2011
title	Crystal Structure Of Ppargammalbd Complexed With The Agonist
authors	H.Zhang, L.Chen, J.Chen, L.Hu, H.Jiang, X.Shen
compound		source
Molecule: Peroxisome Proliferator-Activated Receptor Gamma Chain: A Fragment: Ligand Binding Domain (Unp Residues 232-505) Synonym: Ppar-Gamma, Nuclear Receptor Subfamily 1 Group C M Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pparg, Nr1c3 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 43 21 2	R_factor 0.258 R_Free 0.293
crystal cell	length a length b length c angle alpha angle beta angle gamma 66.040 66.040 155.260 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	MLO	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Molecular determinants of magnolol targeting both RXRalpha and PPARgamma., Zhang H, Xu X, Chen L, Chen J, Hu L, Jiang H, Shen X, PLoS One. 2011;6(11):e28253. Epub 2011 Nov 29. PMID:22140563

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk] Biological Unit Coordinates (3r5n.pdb1.gz) 43 Kb LPC: Ligand-Protein Contacts for 3R5N CSU: Contacts of Structural Units for 3R5N Structure Factors (193 Kb) Retrieve 3R5N in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3R5N from S2C, [Save to disk] Re-refined 3r5n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3R5N in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3R5N

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3R5N, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3r5n_A] [3r5n] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3R5N: [HOLI ] by SMART

Other resources with information on 3R5N

Community annotation for 3R5N at PDBWiki (http://pdbwiki.org)

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