3R85 Apoptosis date Mar 23, 2011
title Crystal Structure Of Human Soul Bh3 Domain In Complex With B
authors E.K.Ambrosi, S.Capaldi, M.Bovi, G.Saccomani, M.Perduca, H.L.Monac
compound source
Molecule: Bcl-2-Like Protein 1
Chain: A, B, C, D
Fragment: Residues 1-209 With The Deletion Of Residues 27-8
Synonym: Bcl2-L-1, Apoptosis Regulator Bcl-X
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Gene: Bcl2l1
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b

Molecule: Heme-Binding Protein 2
Chain: E, F, G, H
Fragment: Residues 147 To 172
Synonym: Placental Protein 23, Pp23, Protein Soul
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 43
R_factor 0.211 R_Free 0.263
length a length b length c angle alpha angle beta angle gamma
66.830 66.830 175.220 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand SO4 enzyme
A, D, C, B

Primary referenceStructural changes in the BH3 domain of SOUL protein upon interaction with the anti-apoptotic protein Bcl-xL., Ambrosi E, Capaldi S, Bovi M, Saccomani G, Perduca M, Monaco HL, Biochem J. 2011 Jun 6. PMID:21639858
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (215 Kb) [Save to disk]
  • Biological Unit Coordinates (3r85.pdb1.gz) 54 Kb
  • Biological Unit Coordinates (3r85.pdb2.gz) 55 Kb
  • Biological Unit Coordinates (3r85.pdb3.gz) 53 Kb
  • Biological Unit Coordinates (3r85.pdb4.gz) 54 Kb
  • LPC: Ligand-Protein Contacts for 3R85
  • CSU: Contacts of Structural Units for 3R85
  • Structure Factors (393 Kb)
  • Retrieve 3R85 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3R85 from S2C, [Save to disk]
  • Re-refined 3r85 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3R85 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3R85
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3R85, from MSDmotif at EBI
  • Fold representative 3r85 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3r85_F] [3r85_C] [3r85] [3r85_B] [3r85_A] [3r85_G] [3r85_H] [3r85_D] [3r85_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3R85: [BCL] [BH4 ] by SMART
  • Other resources with information on 3R85
  • Community annotation for 3R85 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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