3R8I	Transcription	date	Mar 24, 2011
title	Crystal Structure Of Ppargamma With An Achiral Ureidofibrate Derivative (Rt86)
authors	G.Pochetti, R.Montanari, F.Loiodice, A.Laghezza, G.Fracchiolla, A.Lavecchia, E.Novellino, M.Crestani
compound		source
Molecule: Peroxisome Proliferator-Activated Receptor Gamma Chain: A, B Fragment: Unp Residues 223-505 Synonym: Ppar-Gamma, Nuclear Receptor Subfamily 1 Group C M Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pparg, Nr1c3 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
symmetry	Space Group: C 1 2 1	R_factor 0.252 R_Free 0.285
crystal cell	length a length b length c angle alpha angle beta angle gamma 93.589 62.398 118.392 90.00 102.11 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	XCX BindingDB	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Synthesis, Characterization and Biological Evaluation of Ureidofibrate-Like Derivatives Endowed with Peroxisome Proliferator-Activated Receptor Activity., Porcelli L, Gilardi F, Laghezza A, Piemontese L, Mitro N, Azzariti A, Altieri F, Cervoni L, Fracchiolla G, Giudici M, Guerrini U, Lavecchia A, Montanari R, Di Giovanni C, Paradiso A, Pochetti G, Simone GM, Tortorella P, Crestani M, Loiodice F, J Med Chem. 2011 Dec 2. PMID:22081932

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk] Biological Unit Coordinates (3r8i.pdb1.gz) 90 Kb Biological Unit Coordinates (3r8i.pdb2.gz) 47 Kb Biological Unit Coordinates (3r8i.pdb3.gz) 46 Kb LPC: Ligand-Protein Contacts for 3R8I CSU: Contacts of Structural Units for 3R8I Structure Factors (240 Kb) Retrieve 3R8I in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3R8I from S2C, [Save to disk] Re-refined 3r8i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3R8I in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3R8I

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3R8I, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3r8i_A] [3r8i] [3r8i_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3R8I: [HOLI ] by SMART

Other resources with information on 3R8I

Community annotation for 3R8I at PDBWiki (http://pdbwiki.org)

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