3RCP Membrane Protein date Mar 31, 2011
title Crystal Structure Of The Fapp1 Pleckstrin Homology Domain
authors S.Roy, J.He, T.G.Kutateladze
compound source
Molecule: Pleckstrin Homology Domain-Containing Family A Me
Chain: A
Fragment: Residues 1-99, Ph Domain
Synonym: Ph Domain-Containing Family A Member 3, Phosphatidylinositol-Four-Phosphate Adapter Protein 1, Fapp Phosphoinositol 4-Phosphate Adapter Protein 1;
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fapp1, Plekha3
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Rosetta (De3) Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-28a
symmetry Space Group: P 41 21 2
R_factor 0.230 R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
31.025 31.025 216.690 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand GOL, MSE enzyme
Primary referenceMolecular basis of phosphatidylinositol 4-phosphate and ARF1 recognition by the FAPP1 PH domain., He J, Scott JL, Heroux A, Roy S, Lenoir M, Overduin M, Stahelin RV, Kutateladze TG, J Biol Chem. 2011 Mar 22. PMID:21454700
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (3rcp.pdb1.gz) 35 Kb
  • Biological Unit Coordinates (3rcp.pdb2.gz) 70 Kb
  • LPC: Ligand-Protein Contacts for 3RCP
  • CSU: Contacts of Structural Units for 3RCP
  • Structure Factors (330 Kb)
  • Retrieve 3RCP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RCP from S2C, [Save to disk]
  • Re-refined 3rcp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3RCP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3RCP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3RCP, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rcp] [3rcp_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3RCP: [PH ] by SMART
    • Other resources with information on 3RCP
  • Community annotation for 3RCP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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