3RDK date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CL, GCV, GOL, MG, XYP, XYS enzyme
Gene PJDR2
Gene
Ontology
ChainFunctionProcessComponent
B, A


Primary referenceNovel structural features of xylanase A1 from Paenibacillus sp. JDR-2., St John FJ, Preston JF, Pozharski E, J Struct Biol. 2012 Sep 18. pii: S1047-8477(12)00249-3. doi:, 10.1016/j.jsb.2012.09.007. PMID:23000703
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (260 Kb) [Save to disk]
  • Biological Unit Coordinates (3rdk.pdb1.gz) 128 Kb
  • Biological Unit Coordinates (3rdk.pdb2.gz) 128 Kb
  • LPC: Ligand-Protein Contacts for 3RDK
  • CSU: Contacts of Structural Units for 3RDK
  • Structure Factors (2142 Kb)
  • Retrieve 3RDK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RDK from S2C, [Save to disk]
  • Re-refined 3rdk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3RDK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rdk] [3rdk_A] [3rdk_B]
  • SWISS-PROT database:
  • Domain found in 3RDK: [Glyco_10 ] by SMART

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