3RE0 Oxidoreductase date Apr 02, 2011
title Crystal Structure Of Human Apo Cu,Zn Superoxide Dismutase (S Complexed With Cisplatin
authors I.Bertini, O.Blazevits, V.Calderone, M.Jaifei, M.Vieru, I.Amori, M.Cozzolino, M.T.Carri, L.Banci
compound source
Molecule: Superoxide Dismutase [Cu-Zn]
Chain: A, B, C, D
Ec: 1.15.1.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sod1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.209 R_Free 0.290
crystal
cell
length a length b length c angle alpha angle beta angle gamma
157.412 34.805 115.225 90.00 112.28 90.00
method X-Ray Diffractionresolution 2.28 Å
ligand CPT enzyme Oxidoreductase E.C.1.15.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • superoxide dismutase activit...
  • protein binding
  • anterograde axonal transport...
  • retrograde axonal transport

  • Primary referenceInteraction of Cisplatin with Human Superoxide Dismutase., Banci L, Bertini I, Blazevits O, Calderone V, Cantini F, Mao J, Trapananti A, Vieru M, Amori I, Cozzolino M, Carri MT, J Am Chem Soc. 2012 Apr 12. PMID:22471402
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk]
  • Biological Unit Coordinates (3re0.pdb1.gz) 48 Kb
  • Biological Unit Coordinates (3re0.pdb2.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 3RE0
  • CSU: Contacts of Structural Units for 3RE0
  • Structure Factors (1438 Kb)
  • Retrieve 3RE0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RE0 from S2C, [Save to disk]
  • Re-refined 3re0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3RE0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3RE0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3RE0, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3re0_D] [3re0_A] [3re0] [3re0_C] [3re0_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3RE0
  • Community annotation for 3RE0 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
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