OCA Atlas for 3RG1

3RG1

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

BMA, MAN, NAG, PGT

enzyme

Gene
Ontology

Chain	Function	Process	Component
D, H, P, K, C, O, G, L
N, F, J, E, A, B, I, M

Primary reference

An unusual dimeric structure and assembly for TLR4 regulator RP105-MD-1., Yoon SI, Hong M, Wilson IA, Nat Struct Mol Biol. 2011 Aug 21;18(9):1028-35. doi: 10.1038/nsmb.2106. PMID:21857663

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1791 Kb) [Save to disk]

Biological Unit Coordinates (3rg1.pdb1.gz) 466 Kb

Biological Unit Coordinates (3rg1.pdb2.gz) 469 Kb

Biological Unit Coordinates (3rg1.pdb3.gz) 406 Kb

Biological Unit Coordinates (3rg1.pdb4.gz) 466 Kb

LPC: Ligand-Protein Contacts for 3RG1

CSU: Contacts of Structural Units for 3RG1

Structure Factors (1243 Kb)

Retrieve 3RG1 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3RG1 from S2C, [Save to disk]

Re-refined 3rg1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3RG1 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3rg1] [3rg1_A] [3rg1_B] [3rg1_C] [3rg1_D] [3rg1_E] [3rg1_F] [3rg1_G] [3rg1_H] [3rg1_I] [3rg1_J] [3rg1_K] [3rg1_L] [3rg1_M] [3rg1_N] [3rg1_O] [3rg1_P]

SWISS-PROT database:

Domains found in 3RG1: [LRR] [LRRCT] [ML ] by SMART

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