3RIG	Hydrolase	date	Apr 13, 2011
title	Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And Desuccinylase
authors	Y.Zhou
compound		source
Molecule: Nad-Dependent Deacetylase Sirtuin-5 Chain: A, B Fragment: Unp Residues 34-302 Synonym: Sir2-Like Protein 5 Ec: 3.5.1.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Sir2l5, Sirt5 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 R2 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pdest-F1
Molecule: Peptide Of Histone 3 Thioacetyl-Lysine 9 Chain: C, D Engineered: Yes		Synthetic: Yes Other_details: This Human Histone 3 N-Terminal Was Chemical Modified On Residue Lysine 9 With Thioacetyl.
symmetry	Space Group: P 21 21 21	R_factor 0.219 R_Free 0.256
crystal cell	length a length b length c angle alpha angle beta angle gamma 52.538 67.876 156.749 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	NHE, TLY, ZN	enzyme	Hydrolase E.C.3.5.1 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Sirt5 is a NAD-dependent protein lysine demalonylase and desuccinylase., Du J, Zhou Y, Su X, Yu JJ, Khan S, Jiang H, Kim J, Woo J, Kim JH, Choi BH, He B, Chen W, Zhang S, Cerione RA, Auwerx J, Hao Q, Lin H, Science. 2011 Nov 11;334(6057):806-9. PMID:22076378

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (178 Kb) [Save to disk] Biological Unit Coordinates (3rig.pdb1.gz) 87 Kb Biological Unit Coordinates (3rig.pdb2.gz) 87 Kb LPC: Ligand-Protein Contacts for 3RIG CSU: Contacts of Structural Units for 3RIG Structure Factors (534 Kb) Retrieve 3RIG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3RIG from S2C, [Save to disk] Re-refined 3rig structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3RIG in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3RIG

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3RIG, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3rig_D] [3rig_C] [3rig_B] [3rig_A] [3rig] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3RIG

Community annotation for 3RIG at PDBWiki (http://pdbwiki.org)

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