OCA Atlas for 3RIT

3RIT

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

1PE, ARG, DLY, MG, SO4

enzyme

Gene
Ontology

Chain	Function	Process	Component
E, D, A, C, B

Primary reference

Homology models guide discovery of diverse enzyme specificities among dipeptide epimerases in the enolase superfamily., Lukk T, Sakai A, Kalyanaraman C, Brown SD, Imker HJ, Song L, Fedorov AA, Fedorov EV, Toro R, Hillerich B, Seidel R, Patskovsky Y, Vetting MW, Nair SK, Babbitt PC, Almo SC, Gerlt JA, Jacobson MP, Proc Natl Acad Sci U S A. 2012 Mar 13;109(11):4122-7. Epub 2012 Mar 5. PMID:22392983

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (294 Kb) [Save to disk]

Biological Unit Coordinates (3rit.pdb1.gz) 118 Kb

Biological Unit Coordinates (3rit.pdb2.gz) 119 Kb

Biological Unit Coordinates (3rit.pdb3.gz) 117 Kb

LPC: Ligand-Protein Contacts for 3RIT

CSU: Contacts of Structural Units for 3RIT

Structure Factors (1545 Kb)

Retrieve 3RIT in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3RIT from S2C, [Save to disk]

Re-refined 3rit structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3RIT in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3rit] [3rit_A] [3rit_B] [3rit_C] [3rit_D] [3rit_E]

SWISS-PROT database:

Domain found in 3RIT: [MR_MLE ] by SMART

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]