3RJW	Transferase Transferase Inhibitor	date	Apr 15, 2011
title	Crystal Structure Of Histone Lysine Methyltransferase G9a Wi Inhibitor
authors	A.Dong, G.A.Wasney, W.Tempel, F.Liu, D.Barsyte, A.Allali-Hassani, I.Chau, T.Hajian, G.Senisterra, N.Chavda, K.Arora, A.Siarheyeva, D.B.Kireev, J.M.Herold, A.Bochkarev, C.Bountra, J.Weigelt, A.M.E S.V.Frye, C.H.Arrowsmith, P.J.Brown, J.Jin, M.Vedadi, Structural Consortium (Sgc)
compound		source
Molecule: Histone-Lysine N-Methyltransferase Ehmt2 Chain: A, B Fragment: Sequence Database Residues 913-1193 Synonym: Euchromatic Histone-Lysine N-Methyltransferase 2, Associated Transcript 8, Histone H3-K9 Methyltransferase 3, Hmtase 3, Lysine N-Methyltransferase 1c, Protein G9a; Ec: 2.1.1.43 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ehmt2, Bat8, C6orf30, G9a, Kmt1c, Ng36 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21-V2r-Prare2 Expression_system_vector_type: Plasmid Expression_system_plasmid: P28a-Lic
symmetry	Space Group: P 1 21 1	R_factor 0.195 R_Free 0.245
crystal cell	length a length b length c angle alpha angle beta angle gamma 56.580 78.083 70.252 90.00 92.16 90.00
method	X-Ray Diffraction	resolution	2.56 Å
ligand	CIQ, SAH, UNX, ZN BindingDB	enzyme	Transferase E.C.2.1.1.43 BRENDA
note	3RJW supersedes 3NNI
Gene Ontology	Chain Function Process Component A, B
Primary reference	A chemical probe selectively inhibits G9a and GLP methyltransferase activity in cells., Vedadi M, Barsyte-Lovejoy D, Liu F, Rival-Gervier S, Allali-Hassani A, Labrie V, Wigle TJ, Dimaggio PA, Wasney GA, Siarheyeva A, Dong A, Tempel W, Wang SC, Chen X, Chau I, Mangano TJ, Huang XP, Simpson CD, Pattenden SG, Norris JL, Kireev DB, Tripathy A, Edwards A, Roth BL, Janzen WP, Garcia BA, Petronis A, Ellis J, Brown PJ, Frye SV, Arrowsmith CH, Jin J, Nat Chem Biol. 2011 Jul 10;7(8):566-74. doi: 10.1038/nchembio.599. PMID:21743462

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (186 Kb) [Save to disk] Biological Unit Coordinates (3rjw.pdb1.gz) 179 Kb LPC: Ligand-Protein Contacts for 3RJW CSU: Contacts of Structural Units for 3RJW Structure Factors (424 Kb) Retrieve 3RJW in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3RJW from S2C, [Save to disk] Re-refined 3rjw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3RJW in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3RJW

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3RJW, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3rjw] [3rjw_B] [3rjw_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3RJW: [PostSET] [PreSET] [SET ] by SMART

Other resources with information on 3RJW

Community annotation for 3RJW at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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