3RK4 Hydrolase date Apr 17, 2011
title Structure Of Rhodococcus Rhodochrous Haloalkane Dehalogenase Dhaa31
authors M.Lahoda, A.Stsiapanava, J.Mesters, R.Chaloupkova, J.Damborsky, I Smatanova
compound source
Molecule: Haloalkane Dehalogenase
Chain: A
Ec: 3.8.1.5
Engineered: Yes
Mutation: Yes
Organism_scientific: Rhodococcus Rhodochrous
Organism_taxid: 1829
Strain: Ncib 13064
Gene: Dhaa, Dhaa31
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Paqn
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.551 44.370 46.411 115.34 98.56 109.59
method X-Ray Diffractionresolution 1.31 Å
ligand CL enzyme Hydrolase E.C.3.8.1.5 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystallographic analysis of 1,2,3-trichloropropane biodegradation by the haloalkane dehalogenase DhaA31., Lahoda M, Mesters JR, Stsiapanava A, Chaloupkova R, Kuty M, Damborsky J, Kuta Smatanova I, Acta Crystallogr D Biol Crystallogr. 2014 Feb;70(Pt 2):209-17. doi:, 10.1107/S1399004713026254. Epub 2014 Jan 17. PMID:24531456
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (107 Kb) [Save to disk]
  • Biological Unit Coordinates (3rk4.pdb1.gz) 103 Kb
  • LPC: Ligand-Protein Contacts for 3RK4
  • CSU: Contacts of Structural Units for 3RK4
  • Structure Factors (506 Kb)
  • Retrieve 3RK4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RK4 from S2C, [Save to disk]
  • Re-refined 3rk4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3RK4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3RK4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3RK4, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rk4] [3rk4_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3RK4
  • Community annotation for 3RK4 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science