3RNI Transferase Transferase Inhibitor date Apr 22, 2011
title Cdk2 In Complex With Inhibitor Rc-3-86
authors S.Betzi, R.Alam, H.Han, A.Becker, E.Schonbrunn
compound source
Molecule: Cyclin-Dependent Kinase 2
Chain: A
Synonym: Cdk2, Cell Division Protein Kinase 2, P33 Protein
Ec: 2.7.11.22
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdk2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Tuner(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex6p-1
symmetry Space Group: P 21 21 21
R_factor 0.209 R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.540 71.850 72.100 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand 21Z enzyme Transferase E.C.2.7.11.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDevelopment of Highly Potent and Selective Diaminothiazole Inhibitors of Cyclin-Dependent Kinases., Schonbrunn E, Betzi S, Alam R, Martin MP, Becker A, Han H, Francis R, Chakrasali R, Jakkaraj S, Kazi A, Sebti SM, Cubitt CL, Gebhard AW, Hazlehurst LA, Tash JS, Georg GI, J Med Chem. 2013 May 6. PMID:23600925
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (3rni.pdb1.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 3RNI
  • CSU: Contacts of Structural Units for 3RNI
  • Structure Factors (176 Kb)
  • Retrieve 3RNI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RNI from S2C, [Save to disk]
  • Re-refined 3rni structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3RNI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3RNI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3RNI, from MSDmotif at EBI
  • Fold representative 3rni from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rni] [3rni_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3RNI: [S_TKc ] by SMART
  • Other resources with information on 3RNI
  • Community annotation for 3RNI at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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