3RNU	Transcription Activator Dna	date	Apr 22, 2011
title	Structural Basis Of Cytosolic Dna Sensing By Innate Immune R
authors	T.C.Jin, T.Xiao
compound		source
Molecule: Gamma-Interferon-Inducible Protein 16 Chain: A, B, C, D Fragment: Human Ifi16 Hinb (Unp Residues 571-766) Synonym: Ifi-16, Interferon-Inducible Myeloid Differentiati Transcriptional Activator; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ifi16, Ifngip1 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet30a
Molecule: Dna (5'-D(Gpcpcpaptpcpapapapgpapgpap 3'); Chain: K Engineered: Yes Other_details: 16mer Dna Oligo		Synthetic: Yes
Molecule: Dna (5'-D(Tpcptpcptpcptptptpgpaptpgp 3'); Chain: L Engineered: Yes Other_details: 16mer Dna Oligo		Synthetic: Yes
symmetry	Space Group: H 3	R_factor 0.176 R_Free 0.216
crystal cell	length a length b length c angle alpha angle beta angle gamma 126.841 126.841 163.868 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	EDO, FMT	enzyme
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Structures of the HIN Domain:DNA Complexes Reveal Ligand Binding and Activation Mechanisms of the AIM2 Inflammasome and IFI16 Receptor., Jin T, Perry A, Jiang J, Smith P, Curry JA, Unterholzner L, Jiang Z, Horvath G, Rathinam VA, Johnstone RW, Hornung V, Latz E, Bowie AG, Fitzgerald KA, Xiao TS, Immunity. 2012 Apr 20;36(4):561-71. Epub 2012 Apr 5. PMID:22483801

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (290 Kb) [Save to disk] Biological Unit Coordinates (3rnu.pdb1.gz) 282 Kb LPC: Ligand-Protein Contacts for 3RNU CSU: Contacts of Structural Units for 3RNU Structure Factors (423 Kb) Retrieve 3RNU in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3RNU from S2C, [Save to disk] Re-refined 3rnu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3RNU in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3RNU

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3RNU, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3rnu_B] [3rnu_D] [3rnu] [3rnu_C] [3rnu_K] [3rnu_A] [3rnu_L] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3RNU

Community annotation for 3RNU at PDBWiki (http://pdbwiki.org)

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