3RQ5	Lyase Lyase Substrate	date	Apr 27, 2011
title	Crystal Structure Of Adpatp-Dependent Nad(P)H-Hydrate Dehyd From Bacillus Subtilis Co-Crystallized With Atpmg2+ And So Coa
authors	I.A.Shumilin, M.Cymborowski, A.Joachimiak, W.Minor, Midwest Cent Structural Genomics (Mcsg)
compound		source
Molecule: Adpatp-Dependent Nad(P)H-Hydrate Dehydratase Chain: A Ec: 4.2.1.93 Engineered: Yes		Organism_scientific: Bacillus Subtilis Organism_taxid: 1423 Gene: Bsu38720, Yxko Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21-Codonplus (De3)-Ripl Expression_system_vector_type: Plasmid Expression_system_plasmid: Pmcsg19
symmetry	Space Group: I 4 2 2	R_factor 0.153 R_Free 0.178
crystal cell	length a length b length c angle alpha angle beta angle gamma 91.765 91.765 169.498 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.70 Å
ligand	COA, GOL	enzyme	Lyase E.C.4.2.1.93 BRENDA
note	3RQ5 is a representative structure
Gene Ontology	Chain Function Process Component A
Primary reference	Identification of Unknown Protein Function Using Metabolite Cocktail Screening., Shumilin IA, Cymborowski M, Chertihin O, Jha KN, Herr JC, Lesley SA, Joachimiak A, Minor W, Structure. 2012 Aug 28. PMID:22940582

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (92 Kb) [Save to disk] Biological Unit Coordinates (3rq5.pdb1.gz) 340 Kb LPC: Ligand-Protein Contacts for 3RQ5 CSU: Contacts of Structural Units for 3RQ5 Structure Factors (610 Kb) Retrieve 3RQ5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3RQ5 from S2C, [Save to disk] Re-refined 3rq5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3RQ5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3RQ5

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3RQ5, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3rq5_A] [3rq5] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3RQ5

Community annotation for 3RQ5 at PDBWiki (http://pdbwiki.org)

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