3RR3 Oxidoreductase Oxidoreductase Inhibitor date Apr 28, 2011
title Structure Of (R)-Flurbiprofen Bound To Mcox-2
authors K.C.Duggan, D.J.Hermanson, J.Musee, J.J.Prusakiewicz, J.Scheib, B.D.Carter, S.Banerjee, J.A.Oates, L.J.Marnett
compound source
Molecule: Prostaglandin Gh Synthase 2
Chain: A, B, C, D
Synonym: Cyclooxygenase-2, Cox-2, Glucocorticoid-Regulated Inflammatory Cyclooxygenase, Gripghs, Macrophage Activation Associated Marker Protein P7173, Pes-2, Phs II, Prostaglan Synthase 2, Pgh Synthase 2, Pghs-2, Prostaglandin-Endoperox Synthase 2, Tis10 Protein;
Ec: 1.14.99.1
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Ptgs2, Cox-2, Cox2, Pghs-B, Tis10
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: P 21 21 2
R_factor 0.197 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
180.615 134.549 122.775 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.84 Å
ligand BOG, FLR, HEM, NAG BindingDB enzyme Oxidoreductase E.C.1.14.99.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • peroxidase activity


  • Primary reference(R)-Profens are substrate-selective inhibitors of endocannabinoid oxygenation by COX-2., Duggan KC, Hermanson DJ, Musee J, Prusakiewicz JJ, Scheib JL, Carter BD, Banerjee S, Oates JA, Marnett LJ, Nat Chem Biol. 2011 Nov;7(11):803-9. PMID:22053353
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (381 Kb) [Save to disk]
  • Biological Unit Coordinates (3rr3.pdb1.gz) 188 Kb
  • Biological Unit Coordinates (3rr3.pdb2.gz) 188 Kb
  • LPC: Ligand-Protein Contacts for 3RR3
  • CSU: Contacts of Structural Units for 3RR3
  • Structure Factors (1521 Kb)
  • Retrieve 3RR3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RR3 from S2C, [Save to disk]
  • Re-refined 3rr3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3RR3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3RR3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3RR3, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rr3_C] [3rr3] [3rr3_D] [3rr3_A] [3rr3_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3RR3: [EGF ] by SMART
  • Other resources with information on 3RR3
  • Community annotation for 3RR3 at PDBWiki (http://pdbwiki.org)
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