OCA Atlas for 3RT4

3RT4

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
A, D, B, C

Primary reference

Structural Basis of Recognition of Pathogen-associated Molecular Patterns and Inhibition of Proinflammatory Cytokines by Camel Peptidoglycan Recognition Protein., Sharma P, Dube D, Singh A, Mishra B, Singh N, Sinha M, Dey S, Kaur P, Mitra DK, Sharma S, Singh TP, J Biol Chem. 2011 May 6;286(18):16208-17. Epub 2011 Mar 21. PMID:21454594

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (126 Kb) [Save to disk]

Biological Unit Coordinates (3rt4.pdb1.gz) 121 Kb

CSU: Contacts of Structural Units for 3RT4

Structure Factors (1618 Kb)

Retrieve 3RT4 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3RT4 from S2C, [Save to disk]

Re-refined 3rt4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3RT4 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3rt4] [3rt4_A] [3rt4_B] [3rt4_C] [3rt4_D]

SWISS-PROT database:

Domains found in 3RT4: [Ami_2] [PGRP ] by SMART

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