3RTP Transferase Transferase Inhibitor date May 03, 2011
title Design And Synthesis Of Brain Penetrant Selective Jnk Inhibi Improved Pharmacokinetic Properties For The Prevention Of Neurodegeneration
authors S.Bowers, A.P.Truong, R.J.Neitz, R.K.Hom, J.M.Sealy, G.D.Probst, Q B.Peterson, W.Chan, R.A.Galemmo Jr., A.W.Konradi, H.L.Sham, H.Pa N.Yao, D.R.Artis, H.Zhang, L.Chen, M.Dryer, B.Samant, W.Zmolek, K. C.Lorentzen, E.Goldbach, G.Tonn, K.P.Quinn, J.Sauer, S.Wright, K. L.Ruslim, Z.Ren, F.Bard, T.A.Yednock, I.Griswold-Prenne
compound source
Molecule: Mitogen-Activated Protein Kinase 10
Chain: A
Fragment: Unp Residues 40-401
Synonym: Map Kinase 10, Mapk 10, Map Kinase P49 3f12, Stres Activated Protein Kinase Jnk3, C-Jun N-Terminal Kinase 3;
Ec: 2.7.11.24
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mapk10, Jnk3, Jnk3a, Prkm10
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.235 R_Free 0.309
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.297 71.701 108.302 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand 34I enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDesign and synthesis of brain penetrant selective JNK inhibitors with improved pharmacokinetic properties for the prevention of neurodegeneration., Bowers S, Truong AP, Jeffrey Neitz R, Hom RK, Sealy JM, Probst GD, Quincy D, Peterson B, Chan W, Galemmo RA Jr, Konradi AW, Sham HL, Toth G, Pan H, Lin M, Yao N, Artis DR, Zhang H, Chen L, Dryer M, Samant B, Zmolek W, Wong K, Lorentzen C, Goldbach E, Tonn G, Quinn KP, Sauer JM, Wright S, Powell K, Ruslim L, Ren Z, Bard F, Yednock TA, Griswold-Prenner I, Bioorg Med Chem Lett. 2011 Sep 15;21(18):5521-7. doi: 10.1016/j.bmcl.2011.06.100., Epub 2011 Jul 7. PMID:21813278
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (3rtp.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 3RTP
  • CSU: Contacts of Structural Units for 3RTP
  • Structure Factors (133 Kb)
  • Retrieve 3RTP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RTP from S2C, [Save to disk]
  • Re-refined 3rtp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3RTP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3RTP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3RTP, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rtp_A] [3rtp]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3RTP: [S_TKc ] by SMART
  • Other resources with information on 3RTP
  • Community annotation for 3RTP at PDBWiki (http://pdbwiki.org)

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