3RYX Lyase date May 11, 2011
title Fluoroalkyl And Alkyl Chains Have Similar Hydrophobicities I To The Hydrophobic Wall Of Carbonic Anhydrase
authors P.W.Snyder, S.Bai, A.Heroux, G.W.Whitesides
compound source
Molecule: Carbonic Anhydrase 2
Chain: B
Synonym: Carbonate Dehydratase II, Carbonic Anhydrase C, Ca Carbonic Anhydrase II, Ca-II;
Ec: 4.2.1.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ca2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
symmetry Space Group: P 1 21 1
R_factor 0.165 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.580 41.781 72.348 90.00 103.58 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand RYX, ZN enzyme Lyase E.C.4.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceFluoroalkyl and Alkyl Chains Have Similar Hydrophobicities in Binding to the ''Hydrophobic Wall'' of Carbonic Anhydrase., Mecinovic J, Snyder PW, Mirica KA, Bai S, Mack ET, Kwant RL, Moustakas DT, Heroux A, Whitesides GM, J Am Chem Soc. 2011 Jul 26. PMID:21790183
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk]
  • Biological Unit Coordinates (3ryx.pdb1.gz) 91 Kb
  • LPC: Ligand-Protein Contacts for 3RYX
  • CSU: Contacts of Structural Units for 3RYX
  • Structure Factors (657 Kb)
  • Retrieve 3RYX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RYX from S2C, [Save to disk]
  • Re-refined 3ryx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3RYX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3RYX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3RYX, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ryx_B] [3ryx]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3RYX: [Carb_anhydrase ] by SMART
  • Other resources with information on 3RYX
  • Community annotation for 3RYX at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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