3S33 Oxidoreductase date May 17, 2011
title Structure Of Thermus Thermophilus Cytochrome Ba3 Oxidase 10s Depressurization
authors V.M.Luna, J.A.Fee, A.A.Deniz, C.D.Stout
compound source
Molecule: Cytochrome C Oxidase Subunit 1
Chain: A
Synonym: Cytochrome C Ba(3) Subunit I, Cytochrome C Oxidase Polypeptide I, Cytochrome Cba3 Subunit 1;
Ec: 1.9.3.1
Engineered: Yes
Organism_scientific: Thermus Thermophilus
Organism_taxid: 300852
Strain: Hb8
Gene: Cbaa, Ttha1135
Expression_system: Thermus Thermophilus
Expression_system_taxid: 300852
Expression_system_strain: Hb8
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmk18

Molecule: Cytochrome C Oxidase Subunit 2
Chain: B
Synonym: Cytochrome C Ba(3) Subunit II, Cytochrome C Oxidas Polypeptide II, Cytochrome Cba3 Subunit 2;
Ec: 1.9.3.1
Engineered: Yes

Organism_scientific: Thermus Thermophilus
Organism_taxid: 300852
Strain: Hb8
Gene: Cbab, Cbac, Ctac, Ttha1134
Expression_system: Thermus Thermophilus
Expression_system_taxid: 300852
Expression_system_strain: Hb8
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmk18

Molecule: Cytochrome C Oxidase Polypeptide 2a
Chain: C
Synonym: Cytochrome C Ba(3) Subunit Iia, Cytochrome C Oxida Polypeptide Iia, Cytochrome Cba3 Subunit 2a;
Ec: 1.9.3.1
Engineered: Yes

Organism_scientific: Thermus Thermophilus
Organism_taxid: 300852
Strain: Hb8
Gene: Cbad, Ttha1133
Expression_system: Thermus Thermophilus
Expression_system_taxid: 300852
Expression_system_strain: Hb8
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmk18
symmetry Space Group: P 43 21 2
R_factor 0.305 R_Free 0.350
crystal
cell
length a length b length c angle alpha angle beta angle gamma
108.250 108.250 162.640 90.00 90.00 90.00
method X-Ray Diffractionresolution 4.45 Å
ligand CU, CUA, HAS, HEM, XE enzyme Oxidoreductase E.C.1.9.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • cytochrome-c oxidase activit...


  • B
  • cytochrome-c oxidase activit...


  • C


    Primary referenceMobility of Xe atoms within the Oxygen Diffusion Channel of Cytochrome ba3 Oxidase., Luna VM, Fee JA, Deniz AA, Stout CD, Biochemistry. 2012 May 19. PMID:22607023
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (110 Kb) [Save to disk]
  • Biological Unit Coordinates (3s33.pdb1.gz) 103 Kb
  • LPC: Ligand-Protein Contacts for 3S33
  • CSU: Contacts of Structural Units for 3S33
  • Structure Factors (125 Kb)
  • Retrieve 3S33 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3S33 from S2C, [Save to disk]
  • Re-refined 3s33 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3S33 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3S33
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3S33, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3s33_C] [3s33_B] [3s33_A] [3s33]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3S33
  • Community annotation for 3S33 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science