3S7M Hydrolase Hydrolase Inhibitor date May 26, 2011
title Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1 Inhibi
authors R.Chopra, A.Olland, K.Svenson
compound source
Molecule: Beta-Secretase 1
Chain: A
Fragment: Unp Residues 46-454
Synonym: Aspartyl Protease 2, Asp2, Asp 2, Beta-Site Amyloi Precursor Protein Cleaving Enzyme 1, Beta-Site App Cleaving Memapsin-2, Membrane-Associated Aspartic Protease 2;
Ec: 3.4.23.46
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bace1, Bace, Kiaa1149
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.182 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.389 103.979 50.137 90.00 94.90 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand 532 enzyme Hydrolase E.C.3.4.23.46 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNew pyrazolyl and thienyl aminohydantoins as potent BACE1 inhibitors: Exploring the S2' region., Malamas MS, Erdei J, Gunawan I, Barnes K, Hui Y, Johnson M, Robichaud A, Zhou P, Yan Y, Solvibile W, Turner J, Fan KY, Chopra R, Bard J, Pangalos MN, Bioorg Med Chem Lett. 2011 Sep 15;21(18):5164-70. Epub 2011 Jul 23. PMID:21835615
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (3s7m.pdb1.gz) 63 Kb
  • LPC: Ligand-Protein Contacts for 3S7M
  • CSU: Contacts of Structural Units for 3S7M
  • Structure Factors (136 Kb)
  • Retrieve 3S7M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3S7M from S2C, [Save to disk]
  • Re-refined 3s7m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3S7M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3S7M
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3S7M, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3s7m_A] [3s7m]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3S7M
  • Community annotation for 3S7M at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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