3S94 Signaling Protein date May 31, 2011
title Crystal Structure Of Lrp6-E1e2
authors Z.Cheng, W.Xu
compound source
Molecule: Low-Density Lipoprotein Receptor-Related Protein
Chain: A, B
Fragment: E1e2, Residues 20-630
Synonym: Lrp-6
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lrp6
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pacgp67b
symmetry Space Group: P 1 21 1
R_factor 0.237 R_Free 0.296
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.540 144.510 70.760 90.00 96.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand NAG enzyme
Primary referenceCrystal structures of the extracellular domain of LRP6 and its complex with DKK1., Cheng Z, Biechele T, Wei Z, Morrone S, Moon RT, Wang L, Xu W, Nat Struct Mol Biol. 2011 Oct 9. doi: 10.1038/nsmb.2139. PMID:21984209
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (392 Kb) [Save to disk]
  • Biological Unit Coordinates (3s94.pdb1.gz) 197 Kb
  • Biological Unit Coordinates (3s94.pdb2.gz) 192 Kb
  • LPC: Ligand-Protein Contacts for 3S94
  • CSU: Contacts of Structural Units for 3S94
  • Structure Factors (2315 Kb)
  • Retrieve 3S94 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3S94 from S2C, [Save to disk]
  • Re-refined 3s94 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3S94 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3S94
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3S94, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3s94] [3s94_A] [3s94_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3S94: [EGF] [LY ] by SMART
  • Other resources with information on 3S94
  • Community annotation for 3S94 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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