3S9X Structural Genomics, Unknown Function date Jun 02, 2011
title High Resolution Crystal Structure Of Asch Domain From Lactob Crispatus Jv V101
authors B.Nocek, X.Xu, H.Cui, R.Jedrzejczak, A.Edwards, A.Savchenko, B.C.M A.Joachimiak, Midwest Center For Structural Genomics (Mcsg)
compound source
Molecule: Asch Domain
Chain: A
Engineered: Yes
 Organism_scientific: Vibrio Cholerae Tma 21
Organism_taxid: 593590
Gene: Vcb_002424
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21de3
symmetry Space Group: P 21 21 21
R_factor 0.134 R_Free 0.172
crystal
cell
length a length b length c angle alpha angle beta angle gamma
35.855 39.689 128.594 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.35 Å
ligand CL, MSE enzyme
note 3S9X is a representative structure
Gene VCB
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (3s9x.pdb1.gz) 68 Kb
  • LPC: Ligand-Protein Contacts for 3S9X
  • CSU: Contacts of Structural Units for 3S9X
  • Structure Factors (553 Kb)
  • Retrieve 3S9X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3S9X from S2C, [Save to disk]
  • Re-refined 3s9x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3S9X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3S9X
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3S9X, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3s9x_A] [3s9x]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3S9X: [ASCH ] by SMART
    • Other resources with information on 3S9X
  • Community annotation for 3S9X at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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