3SBE Hydrolase date Jun 03, 2011
title Crystal Structure Of Rac1 P29s Mutant
authors B.H.Ha, T.J.Boggon
compound source
Molecule: Ras-Related C3 Botulinum Toxin Substrate 1
Chain: A
Synonym: Cell Migration-Inducing Gene 5 Protein, Ras-Like P Tc25, P21-Rac1;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rac1, Tc25, Mig5
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Modified Pet-28
symmetry Space Group: P 2 21 21
R_factor 0.231 R_Free 0.296
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.593 51.892 99.327 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand GNP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceExome sequencing identifies recurrent somatic RAC1 mutations in melanoma., Krauthammer M, Kong Y, Ha BH, Evans P, Bacchiocchi A, McCusker JP, Cheng E, Davis MJ, Goh G, Choi M, Ariyan S, Narayan D, Dutton-Regester K, Capatana A, Holman EC, Bosenberg M, Sznol M, Kluger HM, Brash DE, Stern DF, Materin MA, Lo RS, Mane S, Ma S, Kidd KK, Hayward NK, Lifton RP, Schlessinger J, Boggon TJ, Halaban R, Nat Genet. 2012 Jul 29. doi: 10.1038/ng.2359. PMID:22842228
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (3sbe.pdb1.gz) 61 Kb
  • LPC: Ligand-Protein Contacts for 3SBE
  • CSU: Contacts of Structural Units for 3SBE
  • Structure Factors (101 Kb)
  • Retrieve 3SBE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SBE from S2C, [Save to disk]
  • Re-refined 3sbe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3SBE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3SBE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3SBE, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3sbe] [3sbe_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3SBE: [RHO ] by SMART
  • Other resources with information on 3SBE
  • Community annotation for 3SBE at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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