3SBW	Immune System	date	Jun 06, 2011
title	Crystal Structure Of The Complex Between The Extracellular D Mouse Pd-1 Mutant And Human Pd-L1
authors	E.Lazar-Molnar, U.A.Ramagopal, E.Cao, S.G.Nathenson, S.C.Almo
compound		source
Molecule: Programmed Cell Death Protein 1 Chain: A, B Fragment: Unp Residues 34-150 Synonym: Protein Pd-1 Engineered: Yes Mutation: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Pdcd1, Pd1 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Rosetta (De3) Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-3a
Molecule: Programmed Cell Death 1 Ligand 1 Chain: C Fragment: Unp Residues 19-239 Synonym: Pd-L1, Pdcd1 Ligand 1, Programmed Death Ligand 1, 1, B7-H1; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cd274, B7h1, Pdcd1l1, Pdcd1lg1, Pdl1 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Rosetta (De3) Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-3a
symmetry	Space Group: P 21 21 21	R_factor 0.218 R_Free 0.270
crystal cell	length a length b length c angle alpha angle beta angle gamma 56.778 62.843 160.863 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.28 Å
Gene Ontology	Chain Function Process Component A, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (151 Kb) [Save to disk] Biological Unit Coordinates (3sbw.pdb1.gz) 108 Kb Biological Unit Coordinates (3sbw.pdb2.gz) 40 Kb CSU: Contacts of Structural Units for 3SBW Structure Factors (406 Kb) Retrieve 3SBW in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3SBW from S2C, [Save to disk] Re-refined 3sbw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3SBW in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3SBW

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3SBW, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3sbw_B] [3sbw_A] [3sbw] [3sbw_C] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3SBW: [IG] [IG_like ] by SMART

Other resources with information on 3SBW

Community annotation for 3SBW at PDBWiki (http://pdbwiki.org)

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