3SD5	Transferase Transferase Inhibitor	date	Jun 08, 2011
title	Crystal Structure Of Pi3k Gamma With 5-(2,4-Dimorpholinopyri Yl)-4-(Trifluoromethyl)Pyridin-2-Amine
authors	M.S.Knapp, R.A.Elling
compound		source
Molecule: Phosphatidylinositol-4,5-Bisphosphate 3-Kinase Ca Subunit Gamma Isoform; Chain: A Fragment: Residues 144-1102 Synonym: Pi3-Kinase Subunit Gamma, Pi3k-Gamma, Ptdins-3-Kin Subunit Gamma, Phosphatidylinositol-4,5-Bisphosphate 3-Kina Catalytic Subunit Gamma, Ptdins-3-Kinase Subunit P110-Gamma Pi3k; Ec: 2.7.1.153 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pik3cg Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108
symmetry	Space Group: C 1 2 1	R_factor 0.213 R_Free 0.261
crystal cell	length a length b length c angle alpha angle beta angle gamma 144.264 67.848 106.633 90.00 96.09 90.00
method	X-Ray Diffraction	resolution	3.20 Å
ligand	SD5 BindingDB	enzyme	Transferase E.C.2.7.1.153 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Identification and characterization of NVP-BKM120, an orally available pan class I PI3-Kinase inhibitor., Maira SM, Pecchi S, Huang A, Burger M, Knapp M, Sterker D, Schnell C, Guthy D, Nagel T, Wiesmann M, Brachmann SM, Fritsch C, Dorsch M, Chene P, Shoemaker K, De Pover A, Menezes D, Martiny-Baron G, Fabbro D, Wilson C, Schlegel R, Hofmann F, Garcia-Echeverria C, Sellers WR, Voliva CF, Mol Cancer Ther. 2011 Dec 21. PMID:22188813

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (270 Kb) [Save to disk] Biological Unit Coordinates (3sd5.pdb1.gz) 263 Kb LPC: Ligand-Protein Contacts for 3SD5 CSU: Contacts of Structural Units for 3SD5 Structure Factors (929 Kb) Retrieve 3SD5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3SD5 from S2C, [Save to disk] Re-refined 3sd5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 3SD5

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3SD5, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3sd5] [3sd5_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3SD5: [PI3K_C2] [PI3K_rbd] [PI3Ka] [PI3Kc ] by SMART

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