3SDD	Immune System	date	Jun 09, 2011
title	Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr In With Cd1d-Beta-Lactosylceramide
authors	A.J.Clarke, J.Rossjohn
compound		source
Molecule: Antigen-Presenting Glycoprotein Cd1d1 Chain: A Fragment: Extracellular Domain, Unp Residues 19-297 Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Cd1.1, Cd1d1 Expression_system: Trichoplusia Ni Expression_system_taxid: 7111 Expression_system_cell_line: Hi5 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pfastbac Dual
Molecule: Beta-2-Microglobulin Chain: B Fragment: Extracellular Domain, Unp Residues 21-119 Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: B2m Expression_system: Trichoplusia Ni Expression_system_taxid: 7111 Expression_system_cell_line: Hi5 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pfastbac Dual
Molecule: Nkt Tcr Valpha14 Chain Chain: C Engineered: Yes Other_details: Chimera Of Mouse Variable Domain And Human C Domain;		Organism_scientific: Mus Musculus , Homo Sapiens Organism_common: Mouse, Human Organism_taxid: 10090, 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet30b
Molecule: Nkt Tcr Autoreactive-Vbeta6 Chain Chain: D Engineered: Yes Other_details: Chimera Of Mouse Variable Domain And Human C Domain		Organism_scientific: Mus Musculus , Homo Sapiens Organism_common: Mouse, Human Organism_taxid: 10090, 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet30b
symmetry	Space Group: P 41 21 2	R_factor 0.258 R_Free 0.318
crystal cell	length a length b length c angle alpha angle beta angle gamma 94.469 94.469 291.063 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.00 Å
ligand	3GD, NAG	enzyme
Gene Ontology	Chain Function Process Component B
Primary reference	Recognition of beta-linked self glycolipids mediated by natural killer T cell antigen receptors., Pellicci DG, Clarke AJ, Patel O, Mallevaey T, Beddoe T, Le Nours J, Uldrich AP, McCluskey J, Besra GS, Porcelli SA, Gapin L, Godfrey DI, Rossjohn J, Nat Immunol. 2011 Jul 31;12(9):827-33. doi: 10.1038/ni.2076. PMID:21804559

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk] Biological Unit Coordinates (3sdd.pdb1.gz) 133 Kb LPC: Ligand-Protein Contacts for 3SDD CSU: Contacts of Structural Units for 3SDD Structure Factors (1446 Kb) Retrieve 3SDD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3SDD from S2C, [Save to disk] Re-refined 3sdd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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