OCA Atlas for 3SE8

3SE8

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

EDO, NAG, SO4, TRS

enzyme

note

3SE8 is a representative structure

Gene
Ontology

Chain	Function	Process	Component
G

Primary reference

Focused evolution of HIV-1 neutralizing antibodies revealed by structures and deep sequencing., Wu X, Zhou T, Zhu J, Zhang B, Georgiev I, Wang C, Chen X, Longo NS, Louder M, McKee K, O'Dell S, Perfetto S, Schmidt SD, Shi W, Wu L, Yang Y, Yang ZY, Yang Z, Zhang Z, Bonsignori M, Crump JA, Kapiga SH, Sam NE, Haynes BF, Simek M, Burton DR, Koff WC, Doria-Rose NA, Connors M, Mullikin JC, Nabel GJ, Roederer M, Shapiro L, Kwong PD, Mascola JR, Science. 2011 Sep 16;333(6049):1593-602. Epub 2011 Aug 11. PMID:21835983

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (393 Kb) [Save to disk]

Biological Unit Coordinates (3se8.pdb1.gz) 384 Kb

LPC: Ligand-Protein Contacts for 3SE8

CSU: Contacts of Structural Units for 3SE8

Structure Factors (840 Kb)

Retrieve 3SE8 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3SE8 from S2C, [Save to disk]

Re-refined 3se8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3SE8 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3se8_G] [3se8_H] [3se8_L] [3se8]

SWISS-PROT database:

Domains found in 3SE8: [IG_like] [IGv ] by SMART

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