3SGP Protein Fibril date Jun 15, 2011
title Amyloid-Related Segment Of Alphab-Crystallin Residues 90-100 V91l
authors A.Laganowsky, M.R.Sawaya, D.Cascio, D.Eisenberg
compound source
Molecule: Alpha-Crystallin B Chain
Chain: A, B, C, D
Synonym: Alpha(B)-Crystallin, Heat Shock Protein Beta-5, Hs Carcinoma Antigen Ny-Ren-27, Rosenthal Fiber Component;
Engineered: Yes
Mutation: Yes
 Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Synthetic Peptide
symmetry Space Group: I 21 3
R_factor 0.175 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.681 65.681 65.681 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.40 Å
ligand MPD, MRD enzyme
Primary referenceAtomic view of a toxic amyloid small oligomer., Laganowsky A, Liu C, Sawaya MR, Whitelegge JP, Park J, Zhao M, Pensalfini A, Soriaga AB, Landau M, Teng PK, Cascio D, Glabe C, Eisenberg D, Science. 2012 Mar 9;335(6073):1228-31. PMID:22403391
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (23 Kb) [Save to disk]
  • Biological Unit Coordinates (3sgp.pdb1.gz) 29 Kb
  • Biological Unit Coordinates (3sgp.pdb2.gz) 28 Kb
  • LPC: Ligand-Protein Contacts for 3SGP
  • CSU: Contacts of Structural Units for 3SGP
  • Structure Factors (126 Kb)
  • Retrieve 3SGP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SGP from S2C, [Save to disk]
  • Re-refined 3sgp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3SGP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3SGP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3SGP, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3sgp_B] [3sgp_C] [3sgp_A] [3sgp] [3sgp_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3SGP
  • Community annotation for 3SGP at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science